|
INDEX ALL |
INDEX Male |
INDEX Female |
INDEX Controls |
Allele Count |
36 |
19 |
17 |
36 |
Allele Number |
350 |
202 |
148 |
350 |
Allele Frequency |
0.10286 |
0.09406 |
0.11486 |
0.10286 |
Number of Homozygotes |
1 |
0 |
1 |
1 |
Region: exonic
Annotation: synonymous_SNV
Consequence: ['c.C5874T', 'p.S1958S']
Average Genotype Quality in variant carriers: 81.54
Average Depth at the site in variant carriers: 48.43
Browse the variant in INDEX-db genome browser
|
Score |
Prediction |
SIFT |
None |
None |
Polyphen2 HDIV |
None |
None |
Polyphen2 HVAR |
None |
None |
Mutation Taster |
None |
None |
Mutation Assessor |
None |
None |
LRT |
None |
None |
FATHMM |
None |
None |
CADD Phred |
None |
. |
CADD Raw |
None |
. |
|
Allele Frequency |
ExAC ALL |
0.2284 |
ExAC SAS |
0.2574 |
ExAC AFR |
0.0740 |
ExAC AMR |
0.2456 |
ExAC EAS |
0.4095 |
ExAC FIN |
0.2934 |
ExAC NFE |
0.2178 |
ExAC OTH |
0.2110 |
1000 Genomes |
0.171526 |