Variant: chr17-15950198-G-A

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 49 33 16 49
Allele Number 350 202 148 350
Allele Frequency 0.14000 0.16337 0.10811 0.14000
Number of Homozygotes 10 7 3 10

Gene: NCOR1

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 46.74

Average Depth at the site in variant carriers: 18.74

dbSNP ID: rs1079533

ClinVar: chr17-15950198-G-A

UCSC Browser: chr17-15950198-G-A

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.4578
ExAC SAS 0.4164
ExAC AFR 0.2356
ExAC AMR 0.3532
ExAC EAS 0.1519
ExAC FIN 0.5688
ExAC NFE 0.5442
ExAC OTH 0.5072
1000 Genomes 0.314297