Variant: chr17-15968143-T-C

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 85 46 39 85
Allele Number 350 202 148 350
Allele Frequency 0.24286 0.22772 0.26351 0.24286
Number of Homozygotes 15 6 9 15

Gene: NCOR1

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 75.83

Average Depth at the site in variant carriers: 31.30

dbSNP ID: rs2285583

ClinVar: chr17-15968143-T-C

UCSC Browser: chr17-15968143-T-C

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.5579
ExAC SAS 0.5397
ExAC AFR 0.8497
ExAC AMR 0.4236
ExAC EAS 0.2632
ExAC FIN 0.6071
ExAC NFE 0.5728
ExAC OTH 0.5780
1000 Genomes 0.583067