Variant: chr17-15973844-A-T

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 108 74 34 108
Allele Number 350 202 148 350
Allele Frequency 0.30857 0.36634 0.22973 0.30857
Number of Homozygotes 23 17 6 23

Gene: NCOR1

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 112.41

Average Depth at the site in variant carriers: 44.60

dbSNP ID: rs12942295

ClinVar: chr17-15973844-A-T

UCSC Browser: chr17-15973844-A-T

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.4577
ExAC SAS 0.4015
ExAC AFR 0.3434
ExAC AMR 0.3533
ExAC EAS 0.1426
ExAC FIN 0.5655
ExAC NFE 0.5364
ExAC OTH 0.5045
1000 Genomes 0.351637