Variant: chr17-15983898-T-C

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 11 5 6 11
Allele Number 350 202 148 350
Allele Frequency 0.03143 0.02475 0.04054 0.03143
Number of Homozygotes 0 0 0 0

Gene: NCOR1

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 72.27

Average Depth at the site in variant carriers: 43.18

dbSNP ID: rs139446647

ClinVar: chr17-15983898-T-C

UCSC Browser: chr17-15983898-T-C

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.0091
ExAC SAS 0.0134
ExAC AFR 0.0012
ExAC AMR 0.0053
ExAC EAS 0.0008
ExAC FIN 0.0079
ExAC NFE 0.0110
ExAC OTH 0.0143
1000 Genomes 0.00559105