Variant: chr17-16097899-C-T

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 50 32 18 50
Allele Number 350 202 148 350
Allele Frequency 0.14286 0.15842 0.12162 0.14286
Number of Homozygotes 0 0 0 0

Gene: NCOR1

Region: UTR5

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 55.20

Average Depth at the site in variant carriers: 57.24

dbSNP ID: rs149293452

ClinVar: chr17-16097899-C-T

UCSC Browser: chr17-16097899-C-T

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.3789
ExAC SAS 0.4549
ExAC AFR 0.3610
ExAC AMR 0.3752
ExAC EAS 0.3107
ExAC FIN 0.3722
ExAC NFE 0.3648
ExAC OTH 0.3811
1000 Genomes None