Variant: chr20-31374259-C-T

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 131 77 54 131
Allele Number 350 202 148 350
Allele Frequency 0.37429 0.38119 0.36486 0.37429
Number of Homozygotes 40 21 19 40

Gene: DNMT3B

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 97.80

Average Depth at the site in variant carriers: 34.13

dbSNP ID: rs2424913

ClinVar: chr20-31374259-C-T

UCSC Browser: chr20-31374259-C-T

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.5576
ExAC SAS 0.6606
ExAC AFR 0.6430
ExAC AMR 0.7371
ExAC EAS 0.9973
ExAC FIN 0.4520
ExAC NFE 0.4406
ExAC OTH 0.5112
1000 Genomes 0.688099