Variant: chr20-31383530-C-T

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 155 89 66 155
Allele Number 350 202 148 350
Allele Frequency 0.44286 0.44059 0.44595 0.44286
Number of Homozygotes 64 36 28 64

Gene: DNMT3B

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 130.92

Average Depth at the site in variant carriers: 44.98

dbSNP ID: rs875041

ClinVar: chr20-31383530-C-T

UCSC Browser: chr20-31383530-C-T

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.5069
ExAC SAS 0.5966
ExAC AFR 0.6862
ExAC AMR 0.7135
ExAC EAS 0.9208
ExAC FIN 0.3826
ExAC NFE 0.3804
ExAC OTH 0.4509
1000 Genomes 0.658546