Variant: chr20-31388636-T-C

INDEX-db frequencies

INDEX ALL INDEX Male INDEX Female INDEX Controls
Allele Count 214 120 94 214
Allele Number 350 202 148 350
Allele Frequency 0.61143 0.59406 0.63514 0.61143
Number of Homozygotes 78 41 37 78

Gene: DNMT3B

Region: intronic

Annotation: None

Consequence: None

Average Genotype Quality in variant carriers: 166.38

Average Depth at the site in variant carriers: 54.26

dbSNP ID: rs2424928

ClinVar: chr20-31388636-T-C

UCSC Browser: chr20-31388636-T-C

Browse the variant in INDEX-db genome browser


In silico functional predictions

Score Prediction
SIFT None None
Polyphen2 HDIV None None
Polyphen2 HVAR None None
Mutation Taster None None
Mutation Assessor None None
LRT None None
FATHMM None None
CADD Phred None .
CADD Raw None .

Exome Aggregation Consortium frequencies

Allele Frequency
ExAC ALL 0.5737
ExAC SAS 0.6595
ExAC AFR 0.8040
ExAC AMR 0.7487
ExAC EAS 0.9973
ExAC FIN 0.4519
ExAC NFE 0.4440
ExAC OTH 0.5308
1000 Genomes 0.742612